Yandell's Papers in Statistical Genomics

• Microarray Gene Expression Profiling
• Quantitative Trait Loci (QTL)
• Related Theoretical Work
• Applications in Statistical Genomics

• Statistical Genomics References

Microarray Gene Expression Profiling

• BS Yandell (2002) A graphical investigation of some microarray experiments. ASBMB/ABRF Symposium, Experimental Biology 2002, New Orleans, LA. [Talk (5.2Mb)]
• Y Lin, ST Nadler, H Lan,AD Attie, BS Yandell (2002) Adaptive gene picking with microarray data: detecting important low abundance signals. in The Analysis of Gene Expression Data: Methods and Software, ed by G Parmigiani, ES Garrett, RA Irizarry, SL Zeger. Springer-Verlag (to appear), ch. 13. [Paper 6.2M]
• Y Lin, ST Nadler, AD Attie and BS Yandell (2002) Mining for low-abundance transcripts in microarray data. ENAR/IMS Invited Session on Statistical Applications with Microarray Data. ENAR 2002, Arlington, VA. [Talk 2.1M]
• AD Attie, ST Nadler, JP Stoehr and BS Yandell (2001) Mapping genomics--mRNA abundances as quantitative traits. Proc Nat Acad Sci USA (submitted).
• Y Lin, ST Nadler, AD Attie and BS Yandell (2001) Mining for low-abundance transcripts in microarray data. TR 1031, Department of Statistics, UW-Madison. [Paper]
• ST Nadler, AD Attie and BS Yandell (2000) Reduced expression of cytoskeletal genes in insulin resistance. J Biological Chemistry (in review).
• ST Nadler, JP Stoehr, KL Schueler, G Tanimoto, BS Yandell and AD Attie (2000) The expression of adipogenic genes is decreased in obesity and Diabetes mellitus. Proceedings of the National Academy of Science USA 97, 11371-11376. [Paper]

  Quantitative Trait Loci (QTL)

• H Lan, JP Stoehr, ST Nadler, KL Schueler, BS Yandell, AD Attie (2003) Dimension reduction for mapping mRNA abundance as quantitative traits. Genetics 164: 1607-1614. [Paper]
• BS Yandell (2002) Efficient and robust model selection for quantitative trait loci analysis in inbred lines. QTL II Workshop, NCSU Summer Institute in Statistical Genetics. [Talk (3.8Mb)]
• K Broman, G Churchill, BS Yandell and ZB Zeng (in prep) Statistical Methods for Mapping Quantitative Trait Loci. [Textbook]
• F Zou, JP Fine and BS Yandell (2000) On the empirical likelihood for a semiparametric mixture model. TR #1030, Dept of Statistics, U Wisconsin-Madison. Biometrika (in review). [Paper]
• F Zou, BS Yandell and JP Fine (2000) QTL analysis for combined lines. Genetics (in review).
• S Tavoletti, ET Bingham, BS Yandell, F Veronesi and TC Osborn (1996) Half tetrad analysis in alfalfa using multiple RFLP markers. Proceedings of the National Academy of Science USA 93, 10918-10922. [Paper]
• JM Satagopan and BS Yandell (1996) Estimating the number of quantitative trait loci via Bayesian model determination. Special Contributed Paper Session on Genetic Analysis of Quantitative Traits and Complex Diseases, Biometrics Section, Joint Statistical Meetings, Chicago, IL. [Paper | Software]
• JM Satagopan, BS Yandell, MA Newton and TC Osborn (1996) Markov chain Monte Carlo approach to detect polygene loci for complex traits. Genetics 144, 805-816. [Paper | Software]

  Related Theoretical Work

• H Tao, M Palta, BS Yandell and MA Newton (1999) An estimation method for the semi-parametric mixed effects model. Biometrics 55, 191-202.
• KA Weigel, D Gianola, BS Yandell and JF Keown (1993) Identification of factors causing heterogeneous within-herd variance components using a structural model of variances. J of Dairy Science 76, 1466-1478.
• C Wang, BS Yandell and JJ Rutledge (1992) The dilemma of negative analysis of variance estimators of intraclass correlation and its variants. Theoretical & Applied Genetics 85, 79-88.
• C Wang, BS Yandell and JJ Rutledge (1991) Bias of maximum likelihood estimators of intraclass correlation. Theoretical & Applied Genetics 82, 421-424.

  Applications in Statistical Genomics

• JP Stoehr, ST Nadler, KL Schueler, ME Rabaglia, BS Yandell, SA Metz and AD Attie (2000) Genetic obesity unmasks non-linear interactions between murine type 2 diabetes susceptibility loci. Diabetes 49, 1946-1954.
• JEP Debaene, IL Goldman, B Yandell (1999) Postharvest flux and genotype x environment effects for onion-induced antiplatelet activity, pungency and soluble solids in long-day onion during postharvest cold storage. J Amer Soc Hort Sci 124, 366-372.
• KK Kidwell, LM Hartweck, BS Yandell, PM Crump, JE Brummer, J Moutray and TC Osborn (1998) Forage yields of alfalfa populations derived from parents selected on the basis of molecular marker diversity. Crop Science 39, 223-227.
• RA Teutonico, ME Ferreira, JM Satagopan, BS Yandell, JP Palta and TC Osborn (1995) Genetic analysis and mapping of genes controlling freezing tolerance in oilseed. Molecular Breeding 1, 329-339.
• RL Jeanne, CA Graf and BS Yandell (1995) Non-size-based morphological castes in a social insect. Naturwissenschaften 82, 296-298.
• ME Ferreira, J Satagopan, BS Yandell, PH Williams and TC Osborn (1995) Mapping loci controlling vernalization requirement and flowering time in Brassica napus. Theoretical \& Applied Genetics 90, 727-732.
• SM Stieve, DP Stimart and BS Yandell (1992) Heritable tissue culture induced variation in Zinnia Marylandica. Euphytica 64, 81-89.
• RL Jeanne, NM Williams and BS Yandell (1992) Age polyethism and defense in a tropical social wasp. J of Insect Behavior 5, 211-227.
• J Croxdale, J Smith, BS Yandell and JB Johnson (1992) Stomatal patterning in Tradescantia: an evaluation of the cell lineage theory. Developmental Biology 149 158-167.
• J Romero-Andreas, F Bliss and BS Yandell (1986) Bean Arcelin 1: Inheritance of a novel seed protein of Phaseolus vulgaris L. and its effect on seed composition. Theoretical & Applied Genetics 72, 123-128.