Stephen Stanhope
UW - Madison Dept. of Statistics
1300 University Ave.
Madison, WI 53706 - 1532
stanhope@stat.wisc.edu
Interests: Biostatistics, Mathematical Modeling, Applied Probability,
High Performance Statistical Computing, Bioinformatics.
Areas of Application: Genetic Epidemiology, Cancer Biology, Virology,
Translational Networks, RNA Interference.
Dissertation - Detecting m- and miRNA targeting relationships from observational microarray studies: Systems biology and statistical modeling
Title Page
Preliminary Pages - Table of contents and abstract
Chapter One - Introduction
Chapter Two - Modeling the mechansims of gene silencing
Chapter Three - Model performance on known m/miRNA target pairs
Chapter Four - Combining multiple m/miRNA microarray studies
Chapter Five - Validating novel computational predictions en masse
Chapter Six - Large-scale miRNA-gene association studies
Chapter Seven - Conclusions and reflections
References
Appendix One - Data description, processing and characteristics
Appendix Two - A kinetics model of the gene silencing pathway
Appendix Three - An analysis of target sites per kilobase in statistically identified targets.
Software
PPMM - Poisson Phylogenetic Mixed Model
Teaching
2007 Statistics 441
Midterm 1 Overview
Quiz 1
2006 Fall Statistics 312
Statistical Computing Presentation
Homework 1 Solution
Homework 2 Solution
Homework 3 Solution
Homework 4 Solution
Homework 5 Solution
Homework 6 Solution
Homework 7 Solution
Homework 8 Solution
Homework 9 Solution
Homework 10 Solution
2005 Summer Biostatistics Course
Statistical Computing in R
Student Research Lunch
For 2006, YounJeong Choi and Kevin Eng are in charge of scheduling student
research lunches. For a time, please contact them!
2005 Schedule
2005 Participant List
Links