• 2008 Sobel Lecture, UCSB Statistics, April 2008. ``Dirichlet orderings, differential expression, and gene sets'' pdf
• 2007 SSC, St John's NFLD. ``On the statistics of gene set enrichment'' pdf
• 2006. Chaos and Complex Systems seminar, UW Madison. ``On polyclonality of intestinal tumors'' pdf

• Spring 2009: Statistics 771. Statistical computing
• Previous courses

• Gene Set Statistics
  • Paper: Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis. Annals of Applied Statistics , 1, 85-106.
  • Code: allez is an R package for calibrating gene-set summary statistics derived from microarray data. Utilizes either Gene Ontology (GO) or KEGG gene sets, and various microarray formats. Version 1.0-7, March 09. allez_1.0-7.tar.gz

• Gene Expression Data Analysis:

  EBarrays is an R package for empirical Bayesian analysis of gene expression data. See the developmental packages link at Bioconductor to download this package and obtain more information; or go here .

• Cancer Genome Abnormalities: Instability Selection Modeling of allelic-loss data and comparative genomic hybridization data
• Nonparametric Bayesian Methods . Download an R package to perform semiparametric binary regression .tar.gz [contact Alejandro.JaraVallejos@med.kuleuven.be for more]
• Phylogenetics

Graduate students

Honors

Current positions

• Editor, Annals of Applied Statistics , 2006-present. EJMS
• Member, Committee of Applied and Theoretical Statistics, NAS, 2006-
• Member, Statistical Society of Canada
• Member, American Statistical Association
• Member, Institute of Mathematical Statistics
• Fellow, Royal Statistical Society
• Member, University of Wisconsin Paul Carbone Comprehensive Cancer Center
• Member, Fisher Lecture Committee, COPSS

• Associate Editor, Journal of the American Statistical Association , Case Studies and Applications, 2003-2006
• Member, Genome Study Section, NIH , 2000-2004.
• Associate Editor, Biometrics , 2000-2004.
• Organizer, IMA Workshop Statistical Methods for Gene Expression: Microarrays and Proteomics , Fall 2003.
• Program Committee, IMA Program Probability and Statistics in Complex Systems: Genomics, Networks, and Financial Engineering , 2003-2004.
• Member, Biological Sciences Research Committee, UW Madison 2004-2006
• Member, Spiegelman Award Selection Committee, APHA Statistics Section, 2004-2006 (chair in 2006)

• Madison Area Jugglers
• MAJ Pattern Book (version 1.2, October 1999)
• Team Champions at the 52nd Annual IJA Summer Festival, Niagara Falls New York Really!!
• S-code to sample random patterns