Principal investigator: Interdisciplinary Biostatistics Training Program,
Some research projects
allez is an R package for calibrating gene-set
summary statistics derived from microarray data. Utilizes
either Gene Ontology (GO) or KEGG gene sets, and various microarray
Version 1.0-8, July 09.
EBarrays is an R package implementing parametric
empirical Bayesian analysis for differential gene expression.
grankp is an R package for computing gamma ranking probabilities.
Version 1.1 grankp_1.1.tar.gz .
With Z_1, Z_2, ... , Z_k equal to independent Gamma-distributed
random variables with positive integer shapes a_1, a_2, ..., a_k
and positive rates lambda_1, lambda_2, ..., lambda_k, returned by
the main function is
the (log) probability P[Z_1> Z_2 > ... > Z_k ]