Rolemodel is an R package for multivariate gene-set analysis
MFA code .
Primary report: Wang et al. 2013 . In press at the Annals of Applied Statistics.
dod is an R package for deploying inference in a double over-dispersion model for certain kinds
of sequence count data. Version 2.0, July 2013. dod_2.0.tar.gz .
Primary report:
Pei et al. 2013
metaflu is an R package for deploying meta-analysis
in a class of RNA interference studies.
Version 1.0, December 2012. metaflu_1.0.tar.gz .
Primary report: Hao et al. 2013 .
allez is an R package for calibrating gene-set
summary statistics derived from gene-level genomic data. Utilizes
either Gene Ontology (GO) or KEGG gene sets, and various gene-level
data formats.
Version 2.0.1, September 2013.
allez_2.0.1.tar
EBarrays is an R package implementing parametric
empirical Bayesian analysis for differential gene expression.
grankp is an R package for computing gamma ranking probabilities.
Version 1.1 grankp_1.1.tar.gz .
With Z_1, Z_2, ... , Z_k equal to independent Gamma-distributed
random variables with positive integer shapes a_1, a_2, ..., a_k
and positive rates lambda_1, lambda_2, ..., lambda_k, returned by
the main function is
the (log) probability P[Z_1> Z_2 > ... > Z_k ]