MATLAB Codes used in Moo K. Chung's Publication 

Moo K. Chung  mkchung@wisc.edu
Department of Biostatistics and Medical Informatics
Waisman Laboratory for Brain Imaging and Behavior
University of Wisconsin-Madison

Persistent Homology and Barcodes for Brain Network Modeling (MICCAI 2013)
 
Persistent Homology and Persistent Diagram for Cortical Thickness Data (IPMI 2009, MICCAI 2009)

Epsilon Neighbor Structural Brain Network Construction (SPIE 2011)

Mandible surface modeling package using Laplace-Beltrami eigenfunctions (MICCAI 2010)

Heat kernel smoothing via the Laplace-Beltrami eigenfunctions (MICCAI 2010)

Cosine Series Representation of White Matter Fiber Tracts (3D curve modeling tools) 2009

Amydala Surface Modeling Tools (SurfStat Extension) (NeuroImage 2010)

Weighted Spherical Harmonic Representation (Weighed-SPHARM) (TMI 2007, 2008)

Heat Kernel Smoothing (NeuroImage 2005, IPMI 2005)

General linear models (GLM) in imaging (NeuroImage 2004)

Anisotropic Kernel Smoothing on Diffusion Tensor Images 2003 

Diffusion Smoothing on Manifolds (NeuroImage 2001)


Brain image manipulation tools/tips

  1. How to read huge analyze file into MATLAB (Dec 5, 2007)
  2. Mesh manipulation tools (Nov 13, 2007)
  3. How to read ImageJ ROI file format into MATLAB? (Nov 12. 2007)
  4. Image format conversion Tips
  5. Cortical mesh MNI format
  6. Corrected p-value on cortex
  7. Functional data analysis on a unit circle
  8. Deformation field manipulation (2008)