Publications

Peer-reviewed Publications

  1. Chung, M.K. 2008. R-squared value, The Encyclopedia of Research Design, Sage Publications. 2007. (invited submission).
  2. Vorperian, H.K., Wang, S., Schimek, E.M., Durtschi, R.B., Kent, R.D., Gentry, L.R., Chung, M.K. 2008. Perpubertal sexual dimorphism of the oral and pharyngeal portions of the vocal tract: An imaging study. The Journal of the Accoustical Soceity of America. submitted.
  3. Chung, M.K.,Qiu, A., Nacewicz, B.M., Dalton, K.M., Pollak, S., Davidson, R.J. 2008. Tiling manifolds with orthonormal basis.. submitted.
  4. Kelley, D.J., Dalton, K.M., Chung, M.K., Alexander, A.L., Davidson, R.J. 2008. Interphemispheric connectivity dynamics of affective face integration in autism. submitted.
  5. Vorperian, H.K., Wang, S., Chung, M.K., Schimek, E.M., Durtschi, R.B., Kent, R.D., Ziegert, A.J., Gentry, L.R. 2008. Anatomical development of the oral and pharyngeal portions of the vocal tract for males and females: an imaging study. The Journal of the Accoustical Soceity of America. submitted.
  6. Lee, J.E., Chung, M.K., Lazar, M., DuBray, M.B., Kim, J., Bigler, E.D., Lainhart, J.E., Alexander, A.L. 2008. A study of diffusion tensor imaging by tissue-specific, smoothing compensated voxel-based analysis. NeuroImage, submitted. 
  7. Chung, M.K. Hartley, R., Dalton, K.M., Davidson, R.J. 2008.  . Encoding cortical surface by spherical harmonics.  Special Issue of Statistica Sinica, on Statistical Challenges and Advances in Brain Science. accepted.
  8. Chung, M.K., Dalton, K.M., Davidson, R.J. 2008. . Tensor-based cortical surface morphometry via weighed spherical harmonic representation. IEEE Transactions on Medical Imaging. (invited paper based on MMBIA 2006 oral presentation). accepted.
  9. Chung, D, Chung, M.K, Durtschi, R.B., Vorperian, H.K. 2008. Determining Length-based Measurement Consistency from Magnetic Resonance Images. Academic Radiology. in press.
  10. Singh, V., Mukherjee, L., Chung, M.K. 2008. Cortical surface thickness as a classifier: Boosting for autism classification. 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). accepted.
  11. Chung, M.K., Kelley, D.J., Dalton, K.M., Davidson, R.J. 2008. Quantifying Cortical Surface Asymmetry via Logistic Discrimiant Analysis. submitted. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). (selected for oral presentation). accepted.
  12. Chung, M.K. Nacewicz, B.M., Wang, S., Dalton, K.M., Pollak, S., Davidson, R.J. 2008. Amydala surface modeling with weighted spherical harmonics. 4th International Workshop on Medical Imaging and Augmented Reality (MIAR). accepted.
  13. Kelley, D.J., Oakes, T.R., Greischar, L.L., Chung, M.K., Ollinger, J., Alexander, A.L., Shelton,S.E., Kalin, N., Davidson, R.J. 2008. Automatic physiological waveform processing for fMRI noise correction and analysis. PLoS ONE 3:e1751.
  14. Vorperian, H.K., Durtschi, R.B., Wang, S., Chung, M.K., Ziegert, A.J., Gentry, L.R. 2007. Estimating head circumference from pediatric imaging studies: an improved method. Academic Radiology. 14:1102-1107.
  15. Lee, J.E., Bigler, E.D., Alexander. A.L., Lazar, M., Dubray, M.B., Chung, M.K., Johnson, M., Morgan, J., Miller, J.N., McMahon, W.M., Lu, J., Jeong, E.-K., Lainhart, J.E. 2007. Diffusion tensor imaging of white mater in the superior temporal gyrus and temporal stem in autism.   Neuroscience Letters. 424:127-132.
  16. Chung, M.K. Dalton, K.M., Davidson, R.J. 2007. . Encoding neuroanatomical information using weighted spherical harmonic representation. IEEE Statistical Signal Processing Workshop. Poster. (invited paper).
  17. Shen, L., Saykin, A.L., Chung, M.K., Huang, H. 2007.  . Morphometric analysis of hippocampal shape in mild cognitive impairment: an imaging genetics study. IEEE 7th International Symposium on Bioinformatics and BioEngineering.
  18. Chung, M.K., Dalton, K.M., Shen, L., L., Evans, A.C., Davidson, R.J. 2007. Weighted Fourier series representation and its application to quantifying the amount of gray matter.. Special Issue of  IEEE Transactions on Medical Imaging, on Computational Neuroanatomy. 26:566-581. (invited paper).
  19. Oakes, T.R., Fox, A.S., Johnstone, T., Chung, M.K., Kalin, N., Davidson, R.J. 2007. Integrating VBM into the general linear model with voxelwise anatomical covariates. NeuroImage 34:500-508.
  20. Chung, M.K. 2007. Correlation Coefficient, The Encyclopedia of Measurement & Statistics, Sage Publications. (invited submission).
  21. Shen, L., Saykin, A.J., Chung, M.K., Huang, H., Ford, J., Makedon, F., McHugh, T.L., Rhodes, H. 2006.  Morphometric analysis of genetic variation in hippocampal shape in mild cognitive impairment: role of an IL-6 promoter polymorphism. Computational Systems Bioinformatics (CSB).
  22. Chung, M.K., Shen, L., Dalton, K.M., Davidson, D.J. 2006.  . Multi-scale voxel-based morphometry via weighed spherical harmonic representation. Lecture Notes in Computer Science (LNCS). 4091:36-43. Springer-Verlag. 3rd International Workshop on Medical Imaging and Augmented Reality (MIAR) (selected for oral presentation).
  23. Shen, L., Chung, M.K. 2006.  Large-scale modeling of parametric surfaces using spherical harmonics. Third International Symposium on 3D Data Processing, Visualization and Transmission (3DPVT).
  24. Chung, M.K., Robbins, S., Dalton, K.M., Wang, S., Evans, A.C., Davidson, R.J. 2006. Tensor-based cortical morphometry via weighted spherical harmonic representation. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). (selected for oral presentation as one of the best 13 papers out of 112 submissions).
  25. Chung, M.K. 2006. Heat kernel smoothing on unit sphere..  IEEE International Symposium on Biomedical Imaging (ISBI) 1430.
  26. Lee, J.E., Chung, M.K., Alexander, A.L. 2006. . Evaluation of anisotropic filters for diffusion tensor imaging.  IEEE International Symposium on Biomedical Imaging (ISBI) 1241.
  27. Chung, M.K., Robbins,S., Dalton, K.M., Davidson, Alexander, A.L., R.J., Evans, A.C. 2005. Cortical thickness analysis in autism via heat kernel smoothing. NeuroImage 25:1256-1265 (selected for cover illustration).
  28. Shen, L., Saykin, A., McHugh, T., West, J., Rabin, L., Wishart, H., Chung, M.K., Makedon, F. 2005. Morphometric analysis of 3D surfaces: appliction to hippocampal shape in mild cognitive impairment. . 6th. International conference on Computer vision, Pattern Recognition and Image Processing (CVPRIP). 2005.
  29. Chung, M.K., Robbins, S., Evans, A.C. 2005. ..Unified statistical approach to cortical thickness analysis. Information Processing in Medical Imaging (IPMI). Lecture Notes in Computer Science (LNCS) 3565:627-638. Springer-Verlag. (acceptance rate < 26%).
  30. Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004.  Less white matter concentration in autism: 2D Voxel-Based Morphometry. NeuroImage 23:242-251.
  31. Wu, Y.-C., Field, A.S., Chung, M.K., Badie, B., Alexander, A.L. 2004. Quantitative Analysis of Diffusion Tensor Orientation: Theoretical Framework Magnetic Resonance in Medicine 52:1146-1155.
  32. Chung, M.K., Taylor, J. 2004. Diffusion Smoothing on Brain Surface via Finite Element Method,  IEEE International Symposium on Biomedical Imaging (ISBI). 562. Poster.
  33. Chung, M.K., Worsley, K.J., Robbins, S., Evans, A.C. 2003. Tensor-based Brain Surface Modeling and Analysis, The proceeding of IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Vol I 467-473 (acceptance rate < 24%).
  34. Chung, M.K., Worsley, K.J., Robbins,  S., Paus, P.,  Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2003. Deformation-Based Surface Morphometry with an Application to Gray Matter Deformation, NeuroImage. 18:198-213. (invited paper, selected for cover illustration).
  35. Chung, M.K., Worsley, K.J. , Paus, T., Cherif, C.,  Giedd, J.N.,  Rapoport, J.L,  Evans, A.C. 2001. A Unified Statistical Approach to Deformation-Based Morphometry, NeuroImage 14:595-606 (selected for cover illustration).
  36. J.A. Hanley, L. Joseph, R.W. Platt,  Chung, M.K., Patric Belisle 2001. Visualizing the Median as the Minimum-Deviation Location, The American Statistician, 55:150-152.
  37. Chung, M.K. 2001. Statistical Morphometry in Neuroanatomy, PhD Thesis, McGill University (PhD defense slides, July 24, 2001).

Conference Proceedings/Abstracts
  1. Alexander, A., Lee, J.E., Ardekani, B., Chung, M.K., Bigler, E., Lainhart, J. 2008. Evaluation of DTI image analysis using nonlinear spatial normalization and tissue-specif, smoothing-compensated voxel based analysis: application in autism. 14th Annual Meeting for the Organization for Human Brain Mapping.
  2. Chung, M.K., Kelley, D.J., Dalton, K.M., Davidson, R.J. 2008. Detection of local cortical asymmetry via discriminant power analysis. 14th Annual Meeting of the Organization for Human Brain Mapping.
  3. Chung, M.K. 2008. A new validation technique for cortical data smoothing. 14th Annual Meeting of the Organization for Human Brain Mapping.
  4. Vorperian, H.K., Kent, R.D., Wang, S., Chung, M.K. Gentry, L.R. 2008. Relational growth of vocal tract structures with vocal tract length during the first two decades of life as visualized from MRI and CT studies. Conference on Motor Speech: Motor Speech Disorders.
  5. Vorperian, H.K., Schimek, E.M., Wang, S., Chung, M.K., Kent, R.D., Durtschi, R.B., Ziegert, A.J., Gentry, L.R. 2007. Anatomic development of the vocal tract during the first two decades of life: Evidence on perpubertal sexual dimorphism from MRI and CT studies. Acoustical Society of America (ASA) 154th meeting. Poster
  6. Chung, M.K., Dalton, K.M., Davidson, R.J. 2007. Unified cortical asymmetry analysis in autism via weighted-SPHARM. Human Brain Mapping conference. Poster (selected as one of the best 65 abstracts).
  7. Wang, S., Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2007. Automated diagnosis of autism using Fourier series expansion of corpus callosum boundary. Human Brain Mapping conference. Poster
  8. Kelley, D.J., Dalton, K.M., Nacewicz, B.M., Johnstone, T., Chung, M.K., Oakes, T.R., Alexander, A.L., Davidson, R.J. 2007. Autism eye gaze behavior depends on functional amygdala connectivity with the superior temporal area. Human Brain Mapping conference. Poster
  9. Lee, J.E.  Chung, M.K., Hsu, D., Alexander, A.L. 2007. Probabilistic connectivity using Kullback-Leibler distance, International Socieity for Magnetic Resonance in Medicine (ISMRM) conference. Poster
  10. Lee, J.E., Lazar, M., Alexander, A.L., Bigler, E., Chung, M.K., Hsu, D., Lainhart, J. 2007. Tissue-Specific, Smoothing-Compensated Voxel-Based Analysis of DTI Data. International Socieity for Magnetic Resonance in Medicine (ISMRM) conference. Poster
  11. Lee, J.E., Chung, M.K., Alexander, A.L. 2006. Evaluation of anisotropic filtering for DTI as a function of SNR. Proceedings of the 14th ISMRM Scientific meeting (selected for oral presentation).
  12. Vorperian, H.K., Chung, M.K., Gentry, L.R., Kent, R.D., Durtschi, R.B., Wang, S., Choih, C.S., Ziegert, A.J. 2005. Vocal tract length development during the first two decades of life: a magnetic resonance imaging study. 150th meeting of Acoustical Society of America (ASA). Poster.
  13. Kelley, D.J., Dalton, K.M., Nacwicz, B.M., Johnstone, T., Chung, M.K., Schaefer, H.S., Oakes, T.R., Alexander, A.L., Davidson, R.J. 2005. Altered functional connectivity of amygdala emotional face processing circuitry in autism. The Society for Neuroscience (SFN) meeting.
  14. Shen, L., Saykin, A., McHugh, T., West, J., Rabin, L., Wishart, H., Chung, M.K., Makedon, F. 2005. Morphometric MRI studie of hippocampal shape in MCI using spherical harmonics. Alzheimer's Association International Conference on Prevention of Dementia.
  15. Chung, M.K., Tulaya, L. 2005. Introducing heat and geodesic kernel smoothing on cortical manifolds, 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
  16. Chung, M.K., Kim, D.M., Robbins, S., Evans, A.C., Davidson, R.J. 2005. Partial correlation mapping of cognitive measure and cortical thickness in autism, 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
  17. Xie, X., Chung, M.K., Grace, W. 2005. Magnetic resonance image segmentation with thin plate spline thresholding. 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
  18. Levy, D.M., Fisher, T.G., Chung, M., Lee, J.H., Lazar, M., Oakes, T.R., Kim, J.S., Alexander, A.L. 2005. Characterization of Voxel-Based Variance in DTI Measurements, 13th Meeting of International Society for Magnetic Resonance in Medicine.
  19. Lee, J.H., Chung, M.K., Oakes, T.E., Alexander, A.L. 2005. Anisotropic Gaussian kernel smoothing of DTI data. 13th Meeting of International Society for Magnetic Resonance in Medicine. 2253.
  20. Chung, M.K. Tang, S. 2004. Nonparametric estimation of cortical thickness, 10th Annual Meeting of the Organization for Human Brain Mapping. Budapest, Poster.
  21. Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004. 2D Voxel-based morphometry shows less white matter concentration in autism, 10th Annual Meeting of the Organization for Human Brain Mapping. Poster.
  22. Hoffmann, T.J., Chung, M.K., Dalton, K.M., Alexander, A.L., Wahba, G., Davidson, R.J. 2004. Subpixel curvature estimation of the corpus callosum via splines and its application to autism, 10th Annual Meeting of the Organization for Human Brain Mapping. Poster.
  23. Chung, M.K., Alexander, A.L., Lu, Y. 2003. Connection Probability in Diffusion Tensor Imaging via Anisotropic Gaussian Kernel Smoothing, 9th Annual Meeting of the Organization for Human Brain Mapping.
  24. Chung, M.K., Worsley, K.J., Paus, T., Robbins, S.,  Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2003. Detecting Gray Matter Maturation via Tensor-based Surface Morphometry. 9th Annual Meeting of the Organization for Human Brain Mapping.
  25. Fox, A., Oakes, T., Dalton, K.,  Chung, M.K. 2003.  Alexander, A.L., Davidson, R.,  Preserving Individual Differences for Voxel-Based Morphometry (VBM), 9th Annual Meeting of the Organization for Human Brain Mapping.
  26. Pizzagalli, D.A., Chung, M.K., Oakes, T.R., Davidson, R.J. 2002. Subgenual Prefrontal and Orbitofrontal Cortex Dysfunction in Melancholia: Functional and Structural Correlates Using Concurrent EEG/PET Measurements and Voxel-Based MRI Moprhometry analyses, 42nd Annual Meeting of the Society for Psychophysiological Research, Washington, D.C.
  27. Lu, Y., Chung, M.K. 2002.  An Area-Preserving Brain Suface Flattening Method, 8th Annual Meeting of the Organization for Human Brain Mapping.
  28. Chung, M.K., Worsley, K.J., Robbins S., Paus, T., Taylor, J., Giedd, J.N., Rapoport, J.L., Evans A.C. 2001. Statistical Analysis of Cortical Surface Area Change, with an Application to BrainGrowth, Neuroimage 13S:96 (Powerpoint poster).
  29. Chung, M.K., Worsley, K.J., Taylor, J., Ramsay, J.O. 2001.  Diffusion Smoothing in Brain Imaging, The proceedings of the 53rd Session of the International Statistical Institute, Seoul.
  30. Taylor, J. ,Worsley, K.J., Chung, M.K., Evans, A.C. 2001. Thresholding non-stationary SPMs with an application to cortical surface mapping, NeuroImage 13S:264.
  31. Chung, M.K., K.J. Worsley, J. Taylor, J.O. Ramsay, S. Robbins, A.C. Evans 2001. Diffusion Smoothing on the Cortical Surface,  NeuroImage, 13S:95.
  32. J.S. Kim, J.S. Lee, D.S. Lee, M.J. Jang, E. Kang, Chung, M.K., K.J. Worsley, S. Robbins, D.L. Collins, J.C. Kim, J-K. Chung, M.C. Lee 2001. Longitudinal analysis of local volume changes in brain of cortical deafness using F-18-FDG PET and deformation-based morphometry, NeuroImage, 13S:1202.
  33. Chung, M.K., Worsley, K.J., Cherif, C., Paus, T., Collins, D.L.,  Rapoport,  J.L., Evans, A.C. 2000. Statistiscal analysis of local volume change, with an application to brain growth, Human Brain Mapping Conference, NeuroImage 11S:611 (poster, presentation slides) (selected for oral presentation and NIH student award).

Technical Reports/Student Reports & Theses/Other Publications
  1. Wang, S., 2008. Weighted Fourier Image Analysis and Modeling. PhD thesis. University of Wisconsin-Madison.
  2. Kelley, D.J. 2008. Functional connectivity of Affective Face Processing Network in Autism. PhD thesis. University of Wisconsin-Madison. 
  3. Chung, M.K., Dalton, K.M., Davidson, R.J. 2007. Tensor-based cortical surface morphometry via weighed spherical harmonic representation. Department of Biostatistics and Medical Informatics TR 199, University of Wisconsin-Madison.
  4. Chung, M.K. Hartley, R., Dalton, K.M., Davidson, R.J. 2007. Encoding cortical surface by spherical harmonics. Department of Biostatistics and Medical Informatics TR 198, University of Wisconsin-Madison.
  5. Lee, J.E. 2006. Anistropic acquisition and analysis  for diffusion tensor magnetic resonance imaging. PhD thesis. University of Wisconsin-Madison.
  6. Xie, X., Chung, M.K., Wahba, G. 2006. Magnetic resonance image segmentation with thin plate spline thresholding. TR 1105. Department of Statististics, Universisty of Wisconsin-Madison.
  7. Chung, M.K., Dalton, K.M., Shen, L., L., Evans, A.C., Davidson, R.J. 2006. Unified cortical surface morphometry and its appliction to quantifying amount of gray matter.  TR 1122. Department of Statistics, Univ. of Wisconsin-Madison.
  8. Chung, M.K., Shen, L., Dalton, K.M., Davidson, D.J. 2006. Multi-scale voxel-based morphometry via weighed spherical harmonic representation. submitted. TR 1121. Department of Statistics, Univ. of Wisconsin-Madison.
  9. Chung, M.K., Shen, L., Kelley, D.J., Dalton, K.M., Robbins, S., Evans, A.C., Davidson, R.J. 2006. Weighted spherical harmonic representation and its application to cortical analysis. TR 1118. Department of Statistics, Univ. of Wisconsin-Madison.
  10. Chung, M.K., Robbins, S., Dalton, K.M., Wang, S., Evans, A.C., Davidson, R.J. 2006. Model building in two-sphere via Gauss-Weierstrass kernel smoothing and its application to cortical analysis, Part II: tensor-based cortical morphometry via weighted spherial harmonic representation. TR 1116. Department of Statistics, Univ. of Wisconsin-Madison.
  11. Chung, M.K. 2006. Model building in two-sphere via Gauss-Weierstrass kernel smoothing and its application to cortical analysis, Part I: Gauss-Weierstrass kernel smoothing on unit sphere. TR 1115. Department of Statistics, Univ. of Wisconsin-Madison.
  12. Wang, S, Chung, M.K. 2005. Paramerization and classification of closed anatomical curves. TR 1113. Department of Statistics, University of Wisconsin-Madison.
  13. Xie, X. 2005. Smoothing in magnetic resonance image analysis and a hybrid loss for support vector machine. PhD thesis. TR 1110. Department of Statististics, Universisty of Wisconsin-Madison.
  14. Chung, M.K., Kim, D.M., Kelley, D.J., Robbins, S., Evans, A.C., Davidson, R.J. 2005. Partial correlation mapping of anatomical and behavioral measures and its application to autism. TR1109. Department of Statistics, University of Wisconsin-Madison.
  15. Chung, M.K., Lee J.E., Alexaender, A.L. 2005. Anisotropic kernel smoothing in diffusion tensor imaging: theoretical framework. TR1109. Department of Statistics, University of Wisconsin-Madison. (ENAR 2005 invited talk).
  16. Chung, M.K. 2004. Heat kernel smoothing and its application to cortical manifolds. TR 1090. Department of Statististics, Universisty of Wisconsin-Madison.
  17. Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004. White Matter Density of Corpus Callosum in Autism: 2D Voxel-Based Morphometry. TR. 1089. Department of Statististics, Universisty of Wisconsin-Madison.
  18. Hoffmann, T.J. 2004. Subpixel morphometric analysis of corpus callosum with application to autism. BSc thesis. TR 1101. Department of Statistics, University of Wisconsin-Madison.
  19. Chung, M.K., Lazar, M., Alexander, A.L., Lu., Y., Davidson, R. 2003. Probabilistic Connectivity Measure in Diffusion Tensor Imaging via Anisotropic Kernel Smoothing, TR 1081. Department of Statististics, Universisty of Wisconsin-Madison.
  20. Chung, M.K,. Worsley, K.J., Paus, T., Robbins, S.,  Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2002. Tensor-Based Surface Morphometry, TR 1049.  Department of Statistics, University of Wisconsin-Madison.
  21. Chung, M.K. 2001. On Expected Gaussian Random Determinants.
  22. Chung, M.K., 2000. The Expectation of the Determinant of a Random Matrix, Image: The Bulletin of the International Linear Algebra Society, 23.