Sunduz Keles


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Software:

     
TileHGMM: [R package]  [Vignette]
Software for "Identification of regulatory motifs using a feature selection method  (Keles et al. 2002)": This method is implemented mainly in C (some features use R and Perl) for unix  platforms and uses subroutines from NAG libraries. If you have access to NAG libraries in your unix system , you can obtain a copy of the source code  by emailing me.

Software for Generalized Dabrowska's estimator (Keles et al. 2002): This generalized estimator is implemented in C and a version that uses frailty  models  for censoring mechanism is available. The current version requires as input estimates of censoring probabilities at various time points. Please email me  to obtain a copy of the source code.
 
 Software for constrained motif detection (Keles et al. 2003): C source code that depends on NAG libraries on unix platform is available  through email by me.

 mfure: R package for motif finding by univariate regression and extension (Keles et al. 2004): Please download the tar.gz file.