Articles

Eng KH, Corrada Bravo H, Keles S. (2009) A Phylogenetic Mixture Model for the Evolution of Gene Expression Families. Molecular Biology and Evolution. (To Appear)

Ratkovic MT, Eng KH. (2009) Finding Jumps in Otherwise Smooth Curves: Identifying Critical Events in Political Processes. Political Analysis. (To Appear)

Corrada Bravo H, Wright S, Eng KH, Keles S, Wahba G. Estimating Tree Structured Covariance Matrices via Mixed-Integer Programming. In Proceedings of the Twelfth International Conference on Artificial Intelligence, Volume 5: AISTATS 2009, 41-48. tech report pdf

Begg CB, Eng KH, Hummer AJ. (2007) Statistical tests for clonality. Biometrics. 63(2): 522-530. pdf

Eng KH, Kosorok MR. (2005) Sample size formula for the supremum log rank statistic. Biometrics. 61(1):86-91. pdf

In Preparation

Eng KH, Keles S. Neutral Expectation Tests of Evolutionary Hypotheses.

Eng KH, Keles S. Covariance Model Selection in Model Based Clustering.

Eng KH, Ratkovic MT. Likelihood Based criterion for model selection in mixed-effects models.

Eng KH*, Kvitek D*, Keles S, Gasch A. Transient Genotype-by-Environment interactions in the dynamic response of yeast to heat shock. *Joint first authors

Technical Reports, Invited Papers

Eng KH, Corrada Bravo H, Keles S. (2008) A Phylogenetic Mixture Model for the Evolution of Gene Expression Families. University of Wisconsin-Madison, Dept. of Statistics Technical Report No. 1144. pdf

Eng KH, Keles S, Wahba G. (2008) A Linear Mixed Effects Clustering Model for Multi-species Time Course Gene Expression data. University of Wisconsin-Madison, Dept. of Statistics Technical Report No. 1143. pdf

Eng KH, Kvitek D, Wahba G, Gasch A, Keles S. Exploratory statistical analysis of multi-species time course gene expression data. Proceedings of the 56th International Statistical Institute. July 2007. pdf

Conference Posters, Presentations

ENAR Spring Meeting. March 2008. Student Paper Talk: A Linear Mixed Effects Clustering Model for Multi-species Time Course Gene Expression data.

Midwestern Symposium on Computational Biology and Bioinformatics. October 2007. Poster: Mixed effects clustering model for multi-species time course gene expression data.