DONGJUN CHUNG

Curriculum Vitae

PhD Candidate
Department of Statistics
University of Wisconsin-Madison
Medical Science Center
1300 University Avenue
Madison, WI 53706

e-mail: chungdon_at_stat_dot_wisc_dot_edu


RESEARCH INTEREST

- Computational Biology.
- Machine Learning.
(Advisor: Professor Sunduz Keles)


PUBLICATIONS

 Kuan PF, Chung D, Pan G, Thomson JA, Stewart R, and Keles S (2011),
“A statistical framework for the analysis of ChIP-Seq data,”
Journal of the American Statistical Association, Vol. 106, pp. 891-903.

Chung D, Kuan PF, Li B, SanalKumar R, Liang K, Bresnick E, Dewey C, and Keles S (2011),
“Discovering transcription factor binding sites in highly repetitive regions of genomes
with multi-read analysis of ChIP-Seq data,” PLoS Computational Biology, 7(7): e1002111. [CrossRef]
Chung D and Keles S (2011), “eQTL mapping for functional classes of Saccharomyces cerevisiae genes
with multivariate sparse partial least squares regression,”
Lu HH, Scholkopf B, and Zhao H (Eds.), Handbook of Statistical Bioinformatics, Springer. [website]

Chung D and Keles S (2010), “Sparse partial least squares classification for high dimensional data,”
Statistical Applications in Genetics and Molecular Biology, Vol. 9, Article 17.
Durtschi RB., Chung D, Gentry LR, Chung MK, and Vorperian HK (2009),
“Developmental craniofacial anthropometry: Assessment of race effects,” Clinical Anatomy, Vol. 22, pp.800-808.

Chung D, Chung MK, Durtschi RB, Gentry LR, and Vorperian HK (2008),
“Measurement consistency from magnetic resonance images,” Academic Radiology, Vol. 15, pp.1322-1330.


SOFTWARES

MOSAiCS: MOdel-based one and two Sample Analysis and Inference for ChIP-Seq.
- Bioconductor 2.9 (Release) (BiocViews: mosaics, mosaicsExample)
- Bioconductor 2.10 (Development) (BiocViews: mosaics, mosaicsExample)
- mosaics software Google group
- Available in Galaxy Tool Shed: check "mosaics" under "Sequence Analysis" or "Statistics"

CSEM: Multi-read allocation of ChIP-Seq data.
- Software page
- Available in Galaxy Tool Shed: check "csem" under "Next Gen Mappers"

SPLS: Sparse Partial Least Squares (SPLS) Regression and Classification.
- Software page
- CRAN


RECENT TALKS

2011 ICSA Applied Statistics Symposium, June 2011.
- Multi-read Analysis of ChIP-Seq Data.

ENAR Spring Meeting, March 2011.
- Multi-read Analysis of ChIP-Seq Data.

The Fourth Midwest Statistics Research Colloquium, March 2011.
- Multi-read Analysis of ChIP-Seq Data.

WORK EXPERIENCES

- Fall 2008 ~ : Research Assistant for professor Sunduz Keles

- Fall 2007 ~ Spring 2008 : Project Assistant, Vocal Tract Development Lab, Waisman Center
(Supervisor: Moo K. Chung and Houri K. Vorperian)


EDUCATION

 PhD (in progress), University of Wisconsin, Madison, WI, USA (COURSES)
MA, Yonsei University, Seoul, Republic of Korea, 2006
BA, Yonsei University, Seoul, Republic of Korea, 2004