- Hadley Wickham's Ask Me Anything (AMA)
- Organizing Data in R (Doug Bates)
- R Easy-To-Use Wraps
- R Beginning & Advanced Guides & Tips
- Visualization with R
- Building R Packages
- R, Bioconductor, Biology & Bioinformatics
- R Resources & Archives

Return to Network Skills page.

#### Organizing Data in R (Doug Bates)

- Download "Organizing.Rmd" File from Box
- Organizing.Rmd: R MarkDown
- Organizing.md: MarkDown after R Without Figures
- Organizing.html: HTML Version
- Doug Bates GitHub Repository for Stat 692 (Fall 2014)

#### R Easy-To-Use Wraps

- RStudio (IDE for R)
- knitr, markdown, pandoc & Sweave
- R Commander (Rcmdr)
- Sage Cell Server (Runs R Online) | see Jed Frees's Course, Ch 6: GLIM Example with SageCell
- Seamless R & C++ Integration (Rcpp) (more advanced topic)
- Pretty Quick R (pqR) (faster version of R)
- Roxygen: Documentation System for R Literate Programming

#### R Beginning & Advanced Guides & Tips

- R Documentation
- R Markdown Cheat Sheet
- R Data Import/Export
- Karl Broman's Introduction to R
- Tom Lumley's UW-Seattle Short Course on R
- John Gillett's Introductory Data Analysis with R (UW Stat 327)
- Roger Peng's Computing for Data Analysis (Coursera)
- R Training Videos
- RStudio Training
- Google's R Style Guide
- R Software Introduction for Stat 571 | R Appendices for Course Notes
- Advanced Programming in R (Hadley Wickham)
- Knitr Reproducible Research
- Frank Harrell's Statistical Reporting Tips

#### Visualization with R

- Lattice Book Figures with R Code (Deepayan Sarkar)
- ggplot2 Plotting System for R
- Grammar of Graphics (Weka Learn Studios)
- ggplot2 and the grammar of graphics (Revolution Analytics)
- Graphics with ggplot2 (r4stats.com)
- History of ggplot2 (Wikipedia)
- Vince Vu's Dynamic FPS Presentation: Each frame of Vince's talk animations corresponds to a different estimate along the solution path of the FPS estimator, plotted as biplots using ggbiplot. Each frame was saved as a PNG file, and the sequence converted using ffmpeg into a movie file as described in the WikiBooks ffmpeg Guide. [FPS package to be posted on Vince Vu's Software Page when completed.]

- R Graph Gallery on Facebook
- Revolution Analytics Graph Gallery
- R Graphics Gallery (Alastair Sanderson)
- William S Cleveland's
*Visualizing Data*Book

#### Building R Packages

- Writing R Extensions
- Building R Packages for Windows
- Windows R Tools Official Page (Murdoch Sutherland)
- Karl Broman's Windows Package Info
- Windows Toolset (R Admin Manual)
- An alternative for your own packages is to submit the package to the http://win-builder.R-project.org site. It will build the package and run the package checks then send email to whoever is listed in the DESCRIPTION file as the maintainer with a link to the results. Especially for those of us who don't use Windows and find the steps required under Windows to be unnecessarily it is wonderful. If you have the fortunes package installed you should check
> fortune("installing")

#### R, Bioconductor, Biology & Bioinformatics

- Robert Gentleman (2008) Bioinformatics with R. Chapman & Hall/CRC. ISBN 1-420-06367-7. R Publications
- Computing for Statistical Genetics (Ken Rice & Tom Lumley's SISG Course)
- Advanced R Programming for Bioinformatics (Ken Rice & Tom Lumley's SISG Course)
- Interactive graphics for high-dimensional genetic data (Karl Broman)
- Thirteen years of R/qtl: Just barely sustainable

#### R Resources & Archives

- R Frequently Asked Questions
- The R Project
- R Wiki
- R Bloggers: News & Tutorials
- inside-R: A Community Site for R
- Quick-R (StatMethods)
- Software for Exploratory Data Analysis and Statistical Modelling with R (Weka Learn Studios)
- r4stats: Analyzing the World of Analytics
- Comprehensive R Archive Network (CRAN)
- Bioconductor: Open Source Software for Bioinformatics
- R Forge
- Trending R Repositories in GitHub
- Revolution Analytics: R for the Enterprise (Blog)
- R User Groups